PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28213_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 22196 Da PI: 8.4955 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cotton_A_28213_BGI-A2_v1.0 43 FSCNYCRRKFYSSQALGGHQNAH 65 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.31E-6 | 41 | 71 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVQPDSVSVS LDLTLHFSAN DAEMKGATGE TMGTNTLSTP RVFSCNYCRR KFYSSQALGG 60 HQNAHKRERT MAKRAMRMGL LSDRYTSLAS LPLHGSAFRS LGIKAHSAMH QGMLPSSQRP 120 GDTRSGARFD QGCFGMPIFM EDEEVDLYWP GSFRQVNEER VGSNQAMDLG QNPTQNSNIG 180 FIAMATPPRT DASSPLDLTL KL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616611.1 | 1e-151 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_017616612.1 | 1e-151 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 2e-42 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A1U8K9H7 | 1e-149 | A0A1U8K9H7_GOSHI; zinc finger protein 4-like | ||||
STRING | Gorai.013G031600.1 | 1e-140 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-44 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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