PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27791_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 68aa    MW: 7940.44 Da    PI: 10.2688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27791_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-064421154
                                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                rR +++ +++  L++l+ +      +K + a++Le+A  YIk L
  Cotton_A_27791_BGI-A2_v1.0  4 RRSHKLSDKITALQKLVSPY-----GKADIASVLEEASLYIKLL 42
                                7999**************99.....9****************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.201142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-8455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-6449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MPVRRSHKLS DKITALQKLV SPYGKADIAS VLEEASLYIK LLHQHIQVYI KFLNKSYFKN  60
QIKCLAFY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676783.17e-23PREDICTED: transcription factor bHLH123-like
TrEMBLA0A0D2UXZ12e-23A0A0D2UXZ1_GOSRA; Uncharacterized protein
STRINGGorai.011G255600.14e-24(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17246610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-13bHLH family protein