PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27347_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 312aa    MW: 34297.3 Da    PI: 9.2502
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27347_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-12111137127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 yk e+Cr + ++G+C+yG++C+FaHg+
  Cotton_A_27347_BGI-A2_v1.0 111 YKSEICRAWEEFGHCRYGSKCQFAHGK 137
                                 99***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-14110142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9110141IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596110138IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9111137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDSFYNENNK LNVLKNSNIP KLMTPARSRG SYYSSPENLI KYLRSNSLSS CGNSSSSRKS  60
SFRSSVSPQS EKTPLKVVEK DVLVMDEVLV ASDSNIVGSG SSSSSGSVGY YKSEICRAWE  120
EFGHCRYGSK CQFAHGKEEV RPACLPFRTK SEAQIYKSYA STVSDSYSSK PRLLHPVTET  180
AAFITQKDSF ANPGYTGPSF STPIKPEETI INSLSTVQPD ITRLNTNFTM KRNTKTSKIN  240
PTSTSTIRHD TSATTFTNGS NWSPQDDRID VTLPSFPGQT PSKGDIDAYI DNVLHAPATK  300
KRLPVFSAIC PE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632543.10.0PREDICTED: tristetraprolin-like
TrEMBLA0A0D2PXG40.0A0A0D2PXG4_GOSRA; Uncharacterized protein
STRINGGorai.005G217800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15770815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-08C3H family protein