![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_27285_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 128aa MW: 14416.6 Da PI: 9.7728 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 104.2 | 1.9e-32 | 1 | 128 | 246 | 372 |
GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 +++n ++F+ + ea yy alfds+e+++pre++er++vE+ l r+ n v+ceg+er++r++ ++kWr+r+++aGF+ p Cotton_A_27285_BGI-A2_v1.0 1 MNTNMTPFVLWVGEASAYYGALFDSIESSVPREKSERVMVEEG-LCRKTANSVSCEGRERVKRCKIFGKWRARMTMAGFELKP 82 588999*************************************.9999*********************************** PP GRAS 329 lsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSa 372 lse++a+++++ l+ + ++ ++++ee+g +++gW++r+L+++Sa Cotton_A_27285_BGI-A2_v1.0 83 LSESVAESMRTRLNSGNrVNLrFTMKEENGGICFGWMGRTLTVASA 128 *************998865445**********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 6.5E-30 | 1 | 128 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 13.75 | 1 | 108 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MNTNMTPFVL WVGEASAYYG ALFDSIESSV PREKSERVMV EEGLCRKTAN SVSCEGRERV 60 KRCKIFGKWR ARMTMAGFEL KPLSESVAES MRTRLNSGNR VNLRFTMKEE NGGICFGWMG 120 RTLTVASA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486504.1 | 4e-75 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 1e-49 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A0D2QDD0 | 9e-74 | A0A0D2QDD0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G198300.1 | 2e-74 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52510.1 | 4e-52 | SCARECROW-like 8 |