PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_27168_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 439aa MW: 48283.2 Da PI: 8.6576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_27168_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cotton_A_27168_BGI-A2_v1.0 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	13.5	0.00021	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Cotton_A_27168_BGI-A2_v1.0 155 WKCEKCSKIYAVQSDWKAHTKTC 177 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.78E-6	78	101	No hit	No description
PROSITE profile	PS50157	10.949	79	101	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.8E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	120	150	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.4E-4	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.78E-6	150	175	No hit	No description
SMART	SM00355	160	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MFPTAMSNST SLSEEASTTV SSCTRVVQDF CALIPIVSTI SPQQQPQNIK KKRSLPGNPD 60 PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKEIKKRAY 120 VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHTKTCGTR 180 EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQLAA AAATNPALHH LTSQANPTTN 240 PSSLFPFETH ISLNPWVDPT QTSNPNPNNP LHVKPESHHL APFFQEALQP QKTLITSPLQ 300 SLHVSNNAPS IAAAATSTSP HLSATALLQK AATVGATATQ INNNNNGMDF FGFASGNLAT 360 WQKSSDRFTR DFLGLTGDHH QHHGGGGGNG NVSVSMNVKD VLTYAGEVEL QQHFEREHSL 420 LKPQGFGFAE PASETWADC

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MFPTAMSNST SLSEEASTTV SSCTRVVQDF CALIPIVSTI SPQQQPQNIK KKRSLPGNPD  60
PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NNKEIKKRAY  120
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHTKTCGTR  180
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSANQLAA AAATNPALHH LTSQANPTTN  240
PSSLFPFETH ISLNPWVDPT QTSNPNPNNP LHVKPESHHL APFFQEALQP QKTLITSPLQ  300
SLHVSNNAPS IAAAATSTSP HLSATALLQK AATVGATATQ INNNNNGMDF FGFASGNLAT  360
WQKSSDRFTR DFLGLTGDHH QHHGGGGGNG NVSVSMNVKD VLTYAGEVEL QQHFEREHSL  420
LKPQGFGFAE PASETWADC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	151	215	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-36	151	215	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636357.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-126	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A0D2SS97	0.0	A0A0D2SS97_GOSRA; Uncharacterized protein
STRING	Gorai.008G002200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]