PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26936_BGI-A2_v1.0
Common NameF383_29700
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 416aa    MW: 46242.4 Da    PI: 8.2937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26936_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-065880123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C++C++ F r  nL+ H r+H
  Cotton_A_26936_BGI-A2_v1.0 58 YVCEICSQGFQRDQNLQMHRRRH 80
                                9*********************9 PP
2zf-C2H210.70.0017165183523
                                 TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                 dCg++Fsr +++  H+ ++
  Cotton_A_26936_BGI-A2_v1.0 165 DCGRVFSRVESFIEHQDSC 183
                                 9**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.17E-55581No hitNo description
Gene3DG3DSA:3.30.160.605.8E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9075880IPR007087Zinc finger, C2H2
SMARTSM003550.0115880IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359060140IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035521099129IPR015880Zinc finger, C2H2-like
SMARTSM00355130135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLGYTTSASA LPSSSSDPLS PLENGVTQKR KRKPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICSQGFQRD QNLQMHRRRH KVPWKLLKRE NQEVKKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS KQKQWVCDKC CKGYAVQSDF KAHLKICGTR GHSCDCGRVF SRVESFIEHQ  180
DSCSARRIQP ELLTAVLPSC SSRTAPSASP SSDTNLNFSI APTGTPLLGL PMPRSTEPVF  240
LYGQAPTLDH HRHHRLLQHD LELQLLPSSS AHSTWWNSDK NENRATNLKL SIGSSESVEN  300
IEANTLANAT ETALEALKEL AIAEKTYAEK ARLEAKRQIE MAELEFSSAK RIRQQAQSEL  360
EKAQALKDEA TKKINAIIMK ITCGACKHQF QAATADDETS LAMSYMSSAT TEGEGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-16132185457Zinc finger protein JACKDAW
5b3h_F3e-16132185457Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605208.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-159IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A0B0MX570.0A0A0B0MX57_GOSAR; Zinc finger MAGPIE-like protein
STRINGGorai.009G329200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-112C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]