PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26708_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 486aa    MW: 53733.3 Da    PI: 6.8297
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26708_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.2e-11205261155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Cotton_A_26708_BGI-A2_v1.0 205 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 261
                                 57*******************4444.2344336655.779999**************98 PP
2AP2507.5e-16304355155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Cotton_A_26708_BGI-A2_v1.0 304 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 355
                                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.56E-20205271No hitNo description
SuperFamilySSF541714.77E-15205270IPR016177DNA-binding domain
PfamPF008475.5E-9205261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12206269IPR001471AP2/ERF domain
PROSITE profilePS5103217.649206269IPR001471AP2/ERF domain
SMARTSM003807.0E-23206275IPR001471AP2/ERF domain
PRINTSPR003672.5E-6207218IPR001471AP2/ERF domain
CDDcd000181.87E-11304365No hitNo description
SuperFamilySSF541717.19E-18304365IPR016177DNA-binding domain
PfamPF008473.2E-10304355IPR001471AP2/ERF domain
PROSITE profilePS5103219.111305363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18305364IPR001471AP2/ERF domain
SMARTSM003803.8E-31305369IPR001471AP2/ERF domain
PRINTSPR003672.5E-6345365IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEMLRSSSEP QFVSYEGSSA ATASAASPHY LIDNFYANDW TNPKHQTQQP AMAADESPIL  60
SSFHHHQVPK LEDFLGDSSS IVRYSDNSQT ETQDSSLTHL TQIYDHHNVG AAAYFNDHQD  120
LKAITGFQAF STNSGSEVDD SASMGRTQLA AVEFPGHSNC PTAGSLSLGV NQTSEINTTT  180
TNKAVVSVDS DCSKKIVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQG  240
GYDKEEKAAR AYDLAALKYW GPTATTNFPI TNYSKELEEM KHVTKQEFIA SLRRKSSGFS  300
RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGINAVT  360
NFEMSRYDVE AIAKSSLPIG GAAKRLKISL ESEQKPVVVN HEQPPQCSSN SNISFAPIQQ  420
SISTIPCGIP FDAAAFYQQN LYHHLQASNI SISDLPGSSS TMTTTPTTFM SQPTADQFFL  480
WPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616413.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_017616423.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0D2QMW20.0A0A0D2QMW2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NPA20.0A0A1U8NPA2_GOSHI; AP2-like ethylene-responsive transcription factor AIL6
STRINGGorai.003G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]