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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_26708_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
AP2 |
Protein Properties |
Length: 486aa MW: 53733.3 Da PI: 6.8297 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_26708_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 35.7 | 2.2e-11 | 205 | 261 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + rk + g ++ +e+Aa+a++ a++k++g
Cotton_A_26708_BGI-A2_v1.0 205 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 261
57*******************4444.2344336655.779999**************98 PP
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2 | AP2 | 50 | 7.5e-16 | 304 | 355 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Cotton_A_26708_BGI-A2_v1.0 304 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 355
57****************988532...5************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010080 | Biological Process | regulation of floral meristem growth |
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
GO:0035265 | Biological Process | organ growth |
GO:0048364 | Biological Process | root development |
GO:0060772 | Biological Process | leaf phyllotactic patterning |
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 486 aa
Download sequence Send
to blast |
MEMLRSSSEP QFVSYEGSSA ATASAASPHY LIDNFYANDW TNPKHQTQQP AMAADESPIL 60 SSFHHHQVPK LEDFLGDSSS IVRYSDNSQT ETQDSSLTHL TQIYDHHNVG AAAYFNDHQD 120 LKAITGFQAF STNSGSEVDD SASMGRTQLA AVEFPGHSNC PTAGSLSLGV NQTSEINTTT 180 TNKAVVSVDS DCSKKIVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQG 240 GYDKEEKAAR AYDLAALKYW GPTATTNFPI TNYSKELEEM KHVTKQEFIA SLRRKSSGFS 300 RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGINAVT 360 NFEMSRYDVE AIAKSSLPIG GAAKRLKISL ESEQKPVVVN HEQPPQCSSN SNISFAPIQQ 420 SISTIPCGIP FDAAAFYQQN LYHHLQASNI SISDLPGSSS TMTTTPTTFM SQPTADQFFL 480 WPHQSY
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Publications
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- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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