PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26644_BGI-A2_v1.0
Common NameF383_31963
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 489aa    MW: 52420.4 Da    PI: 7.5835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26644_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1092.2e-34236292259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnh+
  Cotton_A_26644_BGI-A2_v1.0 236 DDGYNWRKYGQKQVKGSEFPRSYYKCTSPGCPVKKKVERSI-DGQVTEIIYKGQHNHQ 292
                                 8****************************************.***************8 PP
2WRKY105.23.3e-33407465159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Cotton_A_26644_BGI-A2_v1.0 407 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTLGCNVRKHVERAATDSKAVITTYEGKHNHN 465
                                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30230294IPR003657WRKY domain
SuperFamilySSF1182901.57E-26233294IPR003657WRKY domain
SMARTSM007746.3E-38235293IPR003657WRKY domain
PfamPF031062.6E-26236292IPR003657WRKY domain
PROSITE profilePS5081125.029236294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-36392467IPR003657WRKY domain
SuperFamilySSF1182903.14E-29399467IPR003657WRKY domain
PROSITE profilePS5081137.585402467IPR003657WRKY domain
SMARTSM007741.5E-38407466IPR003657WRKY domain
PfamPF031062.7E-25408464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGESQEQKPS SQPSKTVAVS RPTITPPPRL CTDALFNGGL GMMGFSPGPM TLVSNLFPDS  60
DELKSFSQLL AGAMASPAAG KIPNFSPLTT TEGQGGVTGS GGGGDDTGLR FRQNKPAGLM  120
IAQPPPMFTL ATGLSPASLL ESPGFSVFSP IAQGPFGMTH QQALAQVTAQ AAQVQCSSTA  180
AASLAPVSAF TADMTTNQQM PISLHSSTVT VNEPSDACQS DHRSQPASLI VDKPADDGYN  240
WRKYGQKQVK GSEFPRSYYK CTSPGCPVKK KVERSIDGQV TEIIYKGQHN HQPPPPNKRA  300
KDTGSLNGNP GNQGNSEPAS QLQSGSSNIL MSKKDQESSQ ATAEHISGMS DSEEAGENEV  360
GVDEKDEDEP DPKRRSTEIR VSEPASSHRT VTEPRIIVQT TSEVDLLDDG YRWRKYGQKV  420
VKGNPYPRSY YKCTTLGCNV RKHVERAATD SKAVITTYEG KHNHNIPAAK TSSHNTSTVM  480
HHKQECRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-41236468878Probable WRKY transcription factor 4
2lex_A4e-41236468878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311180.0KF031118.1 Gossypium hirsutum WRKY transcription factor 116 (WRKY116) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674498.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0B0MVM00.0A0A0B0MVM0_GOSAR; Putative WRKY transcription factor 4-like protein
STRINGGorai.013G090200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-159WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]