PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26446_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 119aa    MW: 13539.7 Da    PI: 10.6973
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26446_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.6e-191649134
                        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                                C+ C tt TplWR gp g+++LCnaCG++yrkk+
  Cotton_A_26446_BGI-A2_v1.0 16 CVDCSTTRTPLWRGGPAGPRSLCNACGIRYRKKN 49
                                ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2171046IPR000679Zinc finger, GATA-type
SMARTSM004019.2E-151066IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-141150No hitNo description
Gene3DG3DSA:3.30.50.107.0E-161450IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.45E-131550No hitNo description
PROSITE patternPS0034401641IPR000679Zinc finger, GATA-type
PfamPF003207.3E-171650IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MNILQQSEFK ETNKRCVDCS TTRTPLWRGG PAGPRSLCNA CGIRYRKKNR ALLGLNRESR  60
SEKSKRGIEV RRSGIKLKSF GREVGMQHMV GNRELKSKLR EEEEAAFLLM ALSCGYVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629766.11e-82PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG105e-27GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2P5WVS02e-81A0A2P5WVS0_GOSBA; Uncharacterized protein
STRINGGorai.007G125000.12e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17347611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.12e-21GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]