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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26409_BGI-A2_v1.0 | ||||||||
Common Name | F383_25325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 736aa MW: 81105.1 Da PI: 6.4384 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Cotton_A_26409_BGI-A2_v1.0 24 RERWSEEEHNRFLEALKLYGRA-WQRIEEYIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.32E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.32 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.1E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.8E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MGTYSSGEEL VIKTRKPYTI TKQRERWSEE EHNRFLEALK LYGRAWQRIE EYIGTKTAVQ 60 IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTGA ATTVQEGAKD 120 GKSEMPLSSL RCKQMLDLEK EPLPERPTGD EKATNLKENE DQSCSEVFTL LHEQNCSSAS 180 SMNKNFIPMS TALKSSCTFR EFVPLPKETF HDSGTSKASN LEKSCTSYEK SAQGQRKDDL 240 DGDFCADEMQ AAQNYPRHVA VHVLDGSLRT CVQNPSLGMS FQDSVFHPTG DVHGPNLFAN 300 PAASATTEHK NNAPKSTHQA LPPFHTPFIH LRPDQEEYRS FLHVSSTFSN LIVSTLLQNP 360 AAHAAASFAA TFWPYANIES SGDSPANELR GFPSTQMNSA PSMAAIAAAT VAAATAWWTA 420 HGLLPICAPL HTGFTCAPAS TAAVPPMENG QIPAANMEQK DKTDLALTTQ DERLYPEYSE 480 SLPGQHSASK SPTSSSSDCE ERVDAKANTE VKATDDEKAA EVIEPQDADK MKNRKQVDRS 540 SCGSNSSSEV ETDMLEKLEK DKEDSKGADP NHPQVECNRR SRSSSNLSDS WKEVSEEGRL 600 AFQALFSREV LPQSFSPPHD GKNKGQQKEN VGTDKQNPVE KDGETSTLDL NRKMLDSRSD 660 RQEVEKNALS KDEKNNAEDG LLRIGLGHAK LKASRTGFKP YKRCSVEAKE NRVMNTGSQG 720 EERGPKRVRL EGEAST |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526180 | 2e-92 | HQ526180.1 Gossypium herbaceum clone NBRI_E_1400 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017637523.1 | 0.0 | PREDICTED: protein LHY-like isoform X2 | ||||
TrEMBL | A0A1U8L6U9 | 0.0 | A0A1U8L6U9_GOSHI; protein LHY-like isoform X2 | ||||
STRING | Gorai.008G131800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5576 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-124 | MYB_related family protein |