PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_26287_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 289aa MW: 32869.3 Da PI: 8.4882

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26287_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	128	147	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Cotton_A_26287_BGI-A2_v1.0 128 FACSICSKTFNRYNNMQMHM 147 78*****************9 PP
2	zf-C2H2	16	3.5e-05	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Cotton_A_26287_BGI-A2_v1.0 212 FMCRKCGKPFAVKGDWRTHEKNC 234 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-5	119	151	No hit	No description
SMART	SM00355	0.17	128	150	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.741	128	155	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-5	128	147	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	130	150	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	175	207	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.71E-6	198	232	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	198	232	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	72	212	232	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAKYKLPVSF QQQQQQQDGE QLGQEPIQCL PLLSRLTENK SLKGDDVGNI VKEEKIEKVT 60 VALHIGLPNS STGDDGDNNN NYSVAENKVF KEEEEPMKKS CFHGCSFNTE SRFWIPTPAQ 120 ILVGPMQFAC SICSKTFNRY NNMQMHMWGH GSEYRKGPDS LKGTQPTAML RLPCYCCAHG 180 CKNNINHPRA KPLKDFRTLQ THYKRKHGAK PFMCRKCGKP FAVKGDWRTH EKNCGKLWYC 240 TCGSDFKHKR SLKDHIRSFG NGHSPHPSLE GFEDLDKDCI TGSEDELTH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016669009.1	0.0	PREDICTED: zinc finger protein WIP3-like
Refseq	XP_017610328.1	0.0	PREDICTED: zinc finger protein WIP3-like
Swissprot	Q9SGD1	1e-118	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A1U8I043	0.0	A0A1U8I043_GOSHI; zinc finger protein WIP3-like
STRING	Gorai.006G111400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-118	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]