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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_26270_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 228aa MW: 25821.9 Da PI: 6.5195 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_26270_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 137.6 | 8e-43 | 4 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdi.ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk 79
+ GfrF Pt+eelv++yL+++++g++ +++ vi+ ++i y++ePwdLpk +k++ ++w++F++r++++a+g r++r+t+
Cotton_A_26270_BGI-A2_v1.0 4 AIGFRFFPTEEELVSFYLRNQLQGTRQDMHLVIPVLNIfYDLEPWDLPKlageLCKGDVEQWFYFIPRQEREARGGRASRTTA 86
57***************************889****873678******656765566888*********************** PP
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
sgyWkatg+ v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
Cotton_A_26270_BGI-A2_v1.0 87 SGYWKATGSPGFVYSSDDRVIGMKKTMVFYKGKAPNGRKTKWKMNEYRA 135
***********************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MAVAIGFRFF PTEEELVSFY LRNQLQGTRQ DMHLVIPVLN IFYDLEPWDL PKLAGELCKG 60
DVEQWFYFIP RQEREARGGR ASRTTASGYW KATGSPGFVY SSDDRVIGMK KTMVFYKGKA 120
PNGRKTKWKM NEYRAIEALS DPYVAAPPKL RHDFSLCRVY VASSSSRAFD RRPLEAHNNA 180
ATTSGGASGT SHAGGDHYNP AEASEDEFWE LVNNLEEHAI GWEQLNEI
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-30 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-30 | 1 | 167 | 15 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 2e-30 | 1 | 167 | 15 | 170 | NAC domain-containing protein 19 |
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