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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_26263_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 359aa MW: 40311.6 Da PI: 8.8158 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_26263_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 159.7 | 1.2e-49 | 8 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgy 82
+ pGfrF+Ptd el+++yLkkk++g + + evi+e++i+++ePwdLp k++ ++++ew+fF+ r +ky++g++++rat++gy
Cotton_A_26263_BGI-A2_v1.0 8 MFPGFRFSPTDVELISYYLKKKLDGYDKCV-EVIPEIEICRYEPWDLPaKSIIKSDNEWFFFCARGRKYPNGSQSRRATEQGY 89
579***********************9777.99***************767777899************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatgk+++v+s +++++g+k+tLvf++grapkge+t+W+mhey +
Cotton_A_26263_BGI-A2_v1.0 90 WKATGKERNVKS-GSNVIGTKRTLVFHTGRAPKGERTEWIMHEYCM 134
************.99*****************************86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009626 | Biological Process | plant-type hypersensitive response |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0034976 | Biological Process | response to endoplasmic reticulum stress |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0005783 | Cellular Component | endoplasmic reticulum |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MSIQASSMFP GFRFSPTDVE LISYYLKKKL DGYDKCVEVI PEIEICRYEP WDLPAKSIIK 60 SDNEWFFFCA RGRKYPNGSQ SRRATEQGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP 120 KGERTEWIMH EYCMKGKSQD SLVVCRLRKN SEFRLNNNSN RVARNHRELS IVHDSNHATS 180 DGGTDLTGIS EGDKAIEFYS KKATSSNDSH SIEQIDSASE SEQKLSNEVA PTESSTLKKD 240 SDDEEDFFAE ILKDDIIRLD ETSLSASTPE ILPMIATTTH RVSLLQGGAN RRIRLTRTKA 300 DVIQHGTGGI STKKWKSEGP PKCLLSVFSP RTAILVILIT LLALLLPCSN FKSSKVFQI
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-41 | 7 | 149 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 7 | 149 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 7 | 149 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 7 | 149 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 7 | 149 | 19 | 167 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 7 | 149 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 7 | 149 | 16 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC847235 | 0.0 | KC847235.1 Gossypium hirsutum NAC domain protein NAC58 mRNA, complete cds. |