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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_26258_BGI-A2_v1.0 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
B3 |
| Protein Properties |
Length: 370aa MW: 42792.5 Da PI: 6.3959 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_26258_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 98 | 6e-31 | 118 | 209 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79
f+kv tpsdv+k++rlv+pk++ae++ +++ e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+
Cotton_A_26258_BGI-A2_v1.0 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSIEKGLLLNFEDRNGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDT 200
89***************************955556888********************************************* PP
EEEEE-.SS CS
B3 80 vvFkld.gr 87
v F++ g+
Cotton_A_26258_BGI-A2_v1.0 201 VSFQRGvGE 209
****54233 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MMNFVEEEEE KGYYCNNEDQ EEDDEEVVMI REISSNNFPF SSPSSSSVSS KYKDAAAAAV 60
HLSLGTFDSR QDHNKTQQQS GFDFDKKQDL VMDLSLGNHK NNDHEESCYE SVEKEHMFDK 120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS IEKGLLLNFE DRNGKTWRFR YSYWNSSQSY 180
VMTKGWSRFV KEKKLVAGDT VSFQRGVGES VKARLYIDWK LRPNALDPSP FAHIQLRNQF 240
NFLQPVRWEP ICISRNYQPL HRLNYSIYPY NHRHQHHFQH QHQQQAITYS NMSQYYQIGA 300
LQGEPMVIDS VPVIEANNNK TSAKRLRLFG VNMDCPNPTQ DESSSSIPLS NTQAEYSNKG 360
KSSLSIDLEL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 4e-61 | 112 | 225 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 4e-61 | 112 | 225 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX616662 | 0.0 | JX616662.1 Gossypium hirsutum clone NBRI_GE61480 microsatellite sequence. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
Plant Mol. Biol., 2015. 89(4-5): p. 529-38
[PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
FEBS J., 2018. 285(21): p. 4041-4059
[PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
[PMID:30397148]
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