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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_26121_BGI-A2_v1.0 |
Common Name | F383_01616 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
AP2 |
Protein Properties |
Length: 427aa MW: 47250.9 Da PI: 5.9925 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_26121_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.7 | 5.1e-17 | 147 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Cotton_A_26121_BGI-A2_v1.0 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
78*******************......55************************997 PP
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2 | AP2 | 38.8 | 2.3e-12 | 239 | 289 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+ + +Aa+a+++a+ k +g
Cotton_A_26121_BGI-A2_v1.0 239 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVDAARAYDKAAIKCNG 289
89********.7******5553..2.26**********99**********99776 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MLDLNLNVGS TESAQDSNSA APFSTERNGD CGNQMDESGT SNSSIVNDDD ESCSTRANGD 60 AFTLCFDILK VGSGGNDFQN DDADVVVTRE LFPATRVGIS EGQSSGNNNK WIDHSFERKE 120 ADESLVIRQQ PSQTSKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA 180 HAAARAYDRA AIKFRGVDAD INFSVSDYEE DMKQMKNLCK EEFVHILRRQ STGFSRGSSK 240 YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DNEVDAARAY DKAAIKCNGR EAVTNFEPST 300 YEGEIIFDTS TNEGNSHNLD LNLGICPPVG NDPKENEQQH HHFHSGPHDV HEGKSSGERD 360 WAWQMHGARP MPPLLPAAAS SGFSFLATPP SAAILPSNLT TPSFHFATPT ATTATPQIYI 420 HMEEPPP
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ526533 | 3e-62 | HQ526533.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GB2FT simple sequence repeat marker, mRNA sequence. |