PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_26053_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 321aa MW: 36318.1 Da PI: 9.1803

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26053_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.5e-32	51	104	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+++gL+++hvkSHLQ+YR+ Cotton_A_26053_BGI-A2_v1.0 51 PRLRWTPELHLCFVRAVERLGGQERATPKLVLQLMNIEGLSIAHVKSHLQMYRS 104 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-29	47	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.916	47	107	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-15	48	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-23	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-10	52	103	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MHKINPLNLD EDEEADDGIS KTINSASPSN SSEKKETASS GVRPYVRSKT PRLRWTPELH 60 LCFVRAVERL GGQERATPKL VLQLMNIEGL SIAHVKSHLQ MYRSKKIDDK GQVVNNRHLL 120 GSVNYCSQNL RYQSMLQDQR VISDISWRAF AGNRINCRRR AGFCRSDMTK EVGSKARNEV 180 VYMNNNPIFS EQPVREIEGF QDIIDDCAEV QPILILPSFS NKWLGRGAER QVRVAKRKAV 240 DDEDLDLSLS LSTKMGQEVR RKTCNEEEAA NSNLSLSLSS PSKTEMYSLN VNMVSKRSNL 300 KEGHDSTRYL KLASTLDLTI S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	52	106	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641173.1	0.0	PREDICTED: uncharacterized protein LOC108482553
TrEMBL	A0A1U8J959	0.0	A0A1U8J959_GOSHI; uncharacterized protein LOC107903224
STRING	Gorai.009G112300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-42	G2-like family protein