PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26035_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 191aa    MW: 21605.3 Da    PI: 10.337
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26035_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-10997190
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                                f k+l   ++  ++rl +p k + +  g +    ++++l+    + W++ +++rk++ +  v+++GW++Fv  n+Lk gD v+ +
  Cotton_A_26035_BGI-A2_v1.0  9 FSKKL--TYTDINKRLAIPTKILPTLpGFNRSHAVKIQLMY-GTKIWSIDCTVRKQGYMkPVFSRGWRKFVVHNKLKIGDRVTMY 90
                                56677..5666677899999999888866655666666665.669******88777777899*********************99 PP

                                E-SSSEE CS
                          B3 84 ldgrsef 90
                                 ++++++
  Cotton_A_26035_BGI-A2_v1.0 91 KVQHQDG 97
                                5544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-12596IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-11694IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.0957109IPR003340B3 DNA binding domain
CDDcd100174.21E-158107No hitNo description
PfamPF023621.2E-71797IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAVQATMMFS KKLTYTDINK RLAIPTKILP TLPGFNRSHA VKIQLMYGTK IWSIDCTVRK  60
QGYMKPVFSR GWRKFVVHNK LKIGDRVTMY KVQHQDGSSH YRVEVEKPAA GNHEVDETTV  120
TRHRREQLPN APMINMLASV PINTLVDDHV IITKPPVCRI FGTNISGEAC CKISTGQRLS  180
LDLVLSQPTI C
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430830.0AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458573.12e-54PREDICTED: uncharacterized protein LOC105779372
TrEMBLA0A2P5YF751e-140A0A2P5YF75_GOSBA; Uncharacterized protein
STRINGGorai.012G167700.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2483734