PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26019_BGI-A2_v1.0 | ||||||||
Common Name | F383_13461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 426aa MW: 46528.7 Da PI: 9.8228 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 177 | 199 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Cotton_A_26019_BGI-A2_v1.0 177 ACSQCGEVFPKIESLELHQAVrH 199 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.808 | 176 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 176 | 199 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.44E-24 | 201 | 419 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.5E-15 | 203 | 419 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MALLTFLPEA AAEPMKQPPK RRRKQVKRQK QPTTSSWDQI KNLLTCKQME RSKVHDPSKN 60 NNPAPPHHHQ HGYSKLGSSC SSICSFRDVV HGNTRVVHRA DNSPESSTLG QETALLRRKA 120 VNGSSSRSLS GSTRSNNSTT TSSSSRAIQF RKLSGCYECH TIVDPSRYPS SRTSICACSQ 180 CGEVFPKIES LELHQAVRHA VSELGPEDSG RNIVEIIFKS SWLKKDNPIC KIERILKVHN 240 NQRTIQRFED CRDAVKTRAL NSTRKNPRCA ADGNELLRFH CTTLSCSLGA RGSSSLCGSI 300 PGCGVCTIIR QGFQNKGEGT APAAEFKGVV TTASSGRAHD SIKRTDGRRA MLVCRVIAGR 360 VKRVADEAPP LEDENSSGVS SSAGSYDSVA AYAGVYSNLE EIVVFNPRAI LPCFVVIYKA 420 LESGVI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394995 | 1e-112 | GQ394995.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2018 SSR marker DPL0425 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624312.1 | 0.0 | PREDICTED: uncharacterized protein LOC108467979 | ||||
TrEMBL | A0A0B0NGY1 | 0.0 | A0A0B0NGY1_GOSAR; Exodeoxyribonuclease 7 large subunit | ||||
STRING | Gorai.002G123600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-164 | C2H2-like zinc finger protein |