PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25894_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 486aa    MW: 54279.7 Da    PI: 5.252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25894_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12305350454
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 +h e+Er+RR+++N++f  Lr  +P+       +++Ka+ L  Av YI +L
  Cotton_A_25894_BGI-A2_v1.0 305 NHVEAERQRREKLNHRFYALRAAVPNV-----SRMDKASLLSDAVTYITEL 350
                                 799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-5626213IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.34E-13299355No hitNo description
PROSITE profilePS5088816.259301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-17301364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16305365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-14307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFIVQSHQEW WTYAIFWQTS TDDHGRLFLA  60
WEDGHFQGTK DTSPKSTPNN NNNNMYSIQG LHNERRNVLK GLQALIGDNH DINGSLVDGT  120
DITDAEWFYV MSLTRSFSVG DGVLGKVLST GSLVWLTGAH ELQFNDCERA REAQLHGIGT  180
LVCIPTNRGV LELGSSDMIK ENWELVQQVK SLFRFDPNLI SGSTQFLERT ISFPDIGLLA  240
GIEEENGGPD NKTIEDLKPG QQSSYVDSEN SDSDGALLAV NNTEKIRTPK KRGRKPGLRR  300
DTPVNHVEAE RQRREKLNHR FYALRAAVPN VSRMDKASLL SDAVTYITEL KSKIEDLESQ  360
LRKVCNEKVK VETIDAMDNQ STTTSEEQAA ARPSNSSSAA TARFSDLQLD VKVMGNDDAI  420
IRVQSENVNY PGARLMSALR DLEFQVHHAS MSCVNELMLQ DIIAKIPYGL TSEEAIKSAL  480
LRRLHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-33252168195Transcription factor MYC3
4rqw_B2e-33252168195Transcription factor MYC3
4rs9_A2e-33252168195Transcription factor MYC3
4yz6_A2e-33252168195Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5912583e-81JX591258.1 Gossypium hirsutum clone NBRI_GE26339 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636983.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8N8V80.0A0A1U8N8V8_GOSHI; transcription factor MYC2-like
STRINGGorai.008G128800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-79bHLH family protein