PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25871_BGI-A2_v1.0
Common NameF383_24092
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 661aa    MW: 73998.6 Da    PI: 6.9007
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25871_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24123223198
                                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 f+k+lt sd++++g +++ +k+a+e+      ++ + +++lt +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD
  Cotton_A_25871_BGI-A2_v1.0 123 FCKILTASDSSTHGGFSVLRKHATEClppldTNQATPTQELTAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 205
                                 99****************************9444445569******************************************* PP

                                 EEEEEE-SSSEE..EEEEE- CS
                          B3  79 fvvFkldgrsefelvvkvfr 98 
                                  +vF   + +++el+v+v+r
  Cotton_A_25871_BGI-A2_v1.0 206 AFVFL--RGDNGELRVGVRR 223
                                 *****..3489999****98 PP
2Auxin_resp104.51.3e-34249328183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                 aaha++t++ F v+Y+Pr+  s+F++ v+k+++a+++++svGmRfkm fe+eds+err++Gt+vgv d++p +W++SkWrsLk
  Cotton_A_25871_BGI-A2_v1.0 249 AAHAVTTQTLFVVYYKPRT--SQFIIGVSKYLEAINNRFSVGMRFKMGFEGEDSPERRFTGTIVGVGDASP-HWSESKWRSLK 328
                                 79****************6..9**********************************************999.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-39112252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-39116238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-20121223No hitNo description
SMARTSM010195.2E-23123225IPR003340B3 DNA binding domain
PfamPF023628.0E-22123223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083123225IPR003340B3 DNA binding domain
PfamPF065076.2E-32249328IPR010525Auxin response factor
PfamPF023093.9E-11527626IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-11541622No hitNo description
PROSITE profilePS5174526.165546638IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN  60
YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPKREV  120
HSFCKILTAS DSSTHGGFSV LRKHATECLP PLDTNQATPT QELTAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQS  240
MHLGVLATAA HAVTTQTLFV VYYKPRTSQF IIGVSKYLEA INNRFSVGMR FKMGFEGEDS  300
PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIKP FSASASINLI  360
QPAVKSKRPR PVYIPASETT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM  420
RQNEADAGYN MRTLLENAWP PSSLVNVSLN FFRNPADASP VELRTSKDVM RDQVEKGKKL  480
EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG  540
TSSSTRTRTK VQMQGIAVGR AIDLTLLKGY DDLINELEKM FDIEGELRHR TKWSVVFTDN  600
ESDMMLVGDD PWVEFCKMVR KIFIYSVDEV KKINARCKFQ ASSLEGEGTV VSLGSEHRSE  660
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1641235313357Auxin response factor 1
4ldw_A1e-1641235313357Auxin response factor 1
4ldw_B1e-1641235313357Auxin response factor 1
4ldx_A1e-1641235313357Auxin response factor 1
4ldx_B1e-1641235313357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366370KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5778035e-71JX577803.1 Gossypium hirsutum clone NBRI_GE9702 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637830.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B0P5L70.0A0A0B0P5L7_GOSAR; Auxin response factor
STRINGGorai.008G126200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9