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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25838_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 87aa MW: 10259.7 Da PI: 6.2423 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 96 | 5.7e-30 | 1 | 86 | 289 | 374 |
GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++g+ei+n+vaceg er+erhe++++W r+++aGFkpv + ++ +++ak + + ++ +gy++ +e++sl+++W+drpL++vS Cotton_A_25838_BGI-A2_v1.0 1 MFGKEIENIVACEGVEREERHERYGRWMVRFGQAGFKPVMMWHDSTEDAKQMEEACGRNGYKIVNERASLMICWHDRPLYAVS 83 599******************************************************************************** PP GRAS 372 aWr 374 aW+ Cotton_A_25838_BGI-A2_v1.0 84 AWT 86 **6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.0E-27 | 1 | 86 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 13.861 | 1 | 66 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MFGKEIENIV ACEGVEREER HERYGRWMVR FGQAGFKPVM MWHDSTEDAK QMEEACGRNG 60 YKIVNERASL MICWHDRPLY AVSAWTC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648552.1 | 6e-63 | PREDICTED: scarecrow-like protein 3 | ||||
TrEMBL | A0A0D2M188 | 2e-60 | A0A0D2M188_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G207600.1 | 3e-61 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-27 | scarecrow-like 3 |