 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_25802_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 308aa MW: 34855.6 Da PI: 4.4966 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_25802_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.5 | 2.7e-19 | 92 | 145 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ +++ +LAk lgL+ rqV +WFqNrRa++k
Cotton_A_25802_BGI-A2_v1.0 92 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 145
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.4 | 6.3e-41 | 91 | 183 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke
Cotton_A_25802_BGI-A2_v1.0 91 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSLQASYNSLKADYDNLVKE 173
69********************************************************************************* PP
HD-ZIP_I/II 84 veeLreelke 93
+++L+ee+ +
Cotton_A_25802_BGI-A2_v1.0 174 TDKLKEEVVQ 183
*****99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MAGGRVYRSN TSADAGSNNL SVLLQSQWVP SSSEPLDTLF IPGSSPSPFL VSGTRSMVSF 60
EGVDRRRSYF RTFDEEEKVE EDIEEYLHRS EKKRRLTVDQ VQFLEKSFEA ENKLEPDRKV 120
QLAKDLGLQS RQVAIWFQNR RARWKTKQLE KDYDSLQASY NSLKADYDNL VKETDKLKEE 180
VVQLTDKLLL EGKEKGKSEL PDAKTSSQEL PSEAAEGEES KVVPVMKSDY TEGVHSSVLL 240
EGAGSSYPFE PDQSDLSQDE EDNLSKGLLH LPSCVFPKLQ DIDYSDPPAG SCNFGFPLDD 300
HAFWSWAY
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
