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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_25715_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 172aa MW: 18781.6 Da PI: 8.6088 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_25715_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 129.6 | 1.3e-40 | 13 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearar 70
+CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+al p ++r da+ss+vyeA+ar+r
Cotton_A_25715_BGI-A2_v1.0 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQALqadpiklsklqelPVHQRGDAVSSIVYEANARVR 95
7*********************************************998665555555555566777**************** PP
DUF260 71 dPvyGavgvilklqqqleqlkaelallkee 100
dPvyG+vg i++lqqq+++l+++lal+++e
Cotton_A_25715_BGI-A2_v1.0 96 DPVYGCVGAISSLQQQIDTLQTQLALTQAE 125
*************************99976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQA 60 LQADPIKLSK LQELPVHQRG DAVSSIVYEA NARVRDPVYG CVGAISSLQQ QIDTLQTQLA 120 LTQAEVVHLR VRQTASFPHG FCPTSPSNSG SPTFKLMGSQ TMPIFDMDMV VD
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GQ394806 | 5e-59 | GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence. |