PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 338aa MW: 38969.6 Da PI: 5.2335

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25477_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++ +s Cotton_A_25477_BGI-A2_v1.0 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRISHFS 58 79*******************************************99987 PP
2	K-box	17	2.4e-07	120	182	16	78
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + qqe+ +L++++++ + ++R + + s+ eL++ e++L + l ++ ++K+ +l ++++ Cotton_A_25477_BGI-A2_v1.0 120 EIQQEIVRLQQQLQMAEDQLRAYEPDPFRFTSMAELESCEKHLVETLANVVQRKEYILSNHLS 182 68********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.688	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.32E-35	2	75	No hit	No description
SuperFamily	SSF55455	4.32E-29	2	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGR 60 RRIEDVFMRY INLPDREREH ALIFPEQIRH PDIQNKEYML RILQQLRSEN DIALQLAKFE 120 IQQEIVRLQQ QLQMAEDQLR AYEPDPFRFT SMAELESCEK HLVETLANVV QRKEYILSNH 180 LSSYDPSPIQ QGLPPSFENE VVNWLPDNGQ NQSQIFDASA SLNPLRDLSS TVYDPLLQGS 240 MSNVDPHNIG DQCHVSNPNT ENFAPWPQSF ASTGLQSNSM PPTLYSHVQH GMVDHQEMAE 300 MVPNDQQMEI PGNYNSHGQM ADNEGSNYEN RVHEHNGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	4e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	4e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	4e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	4e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
6bz1_A	8e-16	1	84	1	85	MEF2 CHIMERA
6bz1_B	8e-16	1	84	1	85	MEF2 CHIMERA
6bz1_C	8e-16	1	84	1	85	MEF2 CHIMERA
6bz1_D	8e-16	1	84	1	85	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616529	4e-61	JX616529.1 Gossypium hirsutum clone NBRI_GE61266 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613771.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-122	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A1U8NWN0	0.0	A0A1U8NWN0_GOSHI; agamous-like MADS-box protein AGL104
STRING	Gorai.005G093000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-115	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]