PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25477_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 338aa    MW: 38969.6 Da    PI: 5.2335
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25477_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27958150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++  +s
  Cotton_A_25477_BGI-A2_v1.0  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRISHFS 58
                                79*******************************************99987 PP
2K-box172.4e-071201821678
                       K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                                 + qqe+ +L++++++ + ++R +  +     s+ eL++ e++L + l ++ ++K+ +l ++++
  Cotton_A_25477_BGI-A2_v1.0 120 EIQQEIVRLQQQLQMAEDQLRAYEPDPFRFTSMAELESCEKHLVETLANVVQRKEYILSNHLS 182
                                 68********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.688161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.32E-35275No hitNo description
SuperFamilySSF554554.32E-29283IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGR  60
RRIEDVFMRY INLPDREREH ALIFPEQIRH PDIQNKEYML RILQQLRSEN DIALQLAKFE  120
IQQEIVRLQQ QLQMAEDQLR AYEPDPFRFT SMAELESCEK HLVETLANVV QRKEYILSNH  180
LSSYDPSPIQ QGLPPSFENE VVNWLPDNGQ NQSQIFDASA SLNPLRDLSS TVYDPLLQGS  240
MSNVDPHNIG DQCHVSNPNT ENFAPWPQSF ASTGLQSNSM PPTLYSHVQH GMVDHQEMAE  300
MVPNDQQMEI PGNYNSHGQM ADNEGSNYEN RVHEHNGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-16270168Myocyte-specific enhancer factor 2A
3mu6_B4e-16270168Myocyte-specific enhancer factor 2A
3mu6_C4e-16270168Myocyte-specific enhancer factor 2A
3mu6_D4e-16270168Myocyte-specific enhancer factor 2A
6bz1_A8e-16184185MEF2 CHIMERA
6bz1_B8e-16184185MEF2 CHIMERA
6bz1_C8e-16184185MEF2 CHIMERA
6bz1_D8e-16184185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165294e-61JX616529.1 Gossypium hirsutum clone NBRI_GE61266 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613771.10.0PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-122AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A1U8NWN00.0A0A1U8NWN0_GOSHI; agamous-like MADS-box protein AGL104
STRINGGorai.005G093000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-115AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]