PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 245aa MW: 27094.9 Da PI: 4.8812

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_25357_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.9	9.4e-17	62	109	2	53
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ykGVr ++ +g+Wv+eIr p++ + r++lg+f tae+Aa+a++ a + + Cotton_A_25357_BGI-A2_v1.0 62 IYKGVRKRS-WGKWVSEIRQPRK---KSRIWLGTFRTAEMAARAHDVASLTI 109 69**888.******843...6*****************997765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.9E-11	61	109	IPR001471	AP2/ERF domain
CDD	cd00018	1.96E-31	61	121	No hit	No description
Gene3D	G3DSA:3.30.730.10	5.4E-31	62	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-20	62	120	IPR016177	DNA-binding domain
SMART	SM00380	2.1E-33	62	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.563	62	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-10	63	74	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-10	85	101	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MAESNHCSSS ETESSITNNN SSSSSLRKPN NPSAMELAAT SMIIDQGKKK QRPRDSSTKH 60 PIYKGVRKRS WGKWVSEIRQ PRKKSRIWLG TFRTAEMAAR AHDVASLTIK GDSATLNFPD 120 LAELLPRPVS LLPRDIQAAA VKAASMVNLN RPSSSSSSSS SSLSESSEEP EELSEIVELP 180 NIEGNFDSFF DSGNEFVLLD SVDVWVYDPS QDFNGGFYDQ IWDVTENFKL NSGSFETFSS 240 ENNLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	44	119	1	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by cold stress. {ECO:0000269\|PubMed:11798174}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393553	1e-134	GQ393553.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0518 SSR marker CGR5551 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610501.1	1e-179	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q39127	6e-57	TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBL	A0A1U8I203	1e-174	A0A1U8I203_GOSHI; ethylene-responsive transcription factor TINY-like
STRING	Gorai.006G097000.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	1e-54	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]