PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25258_BGI-A2_v1.0
Common NameF383_05157
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 414aa    MW: 44927.1 Da    PI: 6.0904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25258_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10254302355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Cotton_A_25258_BGI-A2_v1.0 254 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 302
                                 58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17249318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-11249306No hitNo description
PROSITE profilePS5088815.586251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-17252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7254302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MASDGNDDLG FKHHSLMNTN NPLCDKVDGM ALSSMYNTKS SNSSDPFFGS GWDPMVSLNQ  60
SESLGGGSSM VSHIGFVNSH YPLLMENQGI CGTSHFSQYQ SDPSFVELVP KIQGFGTGNL  120
SEMVGPMSLP RCTQGYAMNH EGGIERASTN STQSRDDPQI SEEGVVGASP NGKCRKRVHE  180
ANQNADEELK KDPSGESCDV PKEHDSKKQK TEQNATANSR GKQVVKQAKD SSQTGEAPKE  240
NYIHVRARRG QATNSHSLAE RVRREKISER MKLLQELVPG CNKITGKAVM LDEIINYVQS  300
LQQQVEFLSM KLATVNPELN IDLERILSKD ILHSRGGNAA VVGFNPGINS SHPFSSGIFP  360
GTISGIPNTN PQFPPLPPQT VLDNELQNLF QMGFDSSSAM DSLGPIGISF IQAL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643018.10.0PREDICTED: transcription factor bHLH74
RefseqXP_017643019.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A0B0NCW50.0A0A0B0NCW5_GOSAR; Transcription factor bHLH74-like protein
STRINGGorai.010G028200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-85bHLH family protein