PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25133_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 214aa    MW: 23935 Da    PI: 8.465
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25133_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.31.6e-11933933
                        GATA  9 TplWRrgpdgnktLCnaCGlyyrkk 33
                                TplWR+gp  ++ LCnaCG +yr+ 
  Cotton_A_25133_BGI-A2_v1.0  9 TPLWRNGPPEKPVLCNACGSRYRLG 33
                                9*******88888**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-6737No hitNo description
PfamPF003202.9E-9933IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-8933IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.74E-11953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMFLVILGTP LWRNGPPEKP VLCNACGSRY RLGKPLENYI PKTLQIIQKK KRKAVPKSVV  60
TNNGNASYSS SAMGDYASSE SSTAHNLNFC SIKQENLDDD FHPVEDLGSS WRNHSRKRSA  120
VVYNSLTTIQ KLERDLQKIL RHEPHLFNGV ESQDDVLIYN VNINNLQIPS KEIGLGTILL  180
NDFPVSSPSS SHHQDEQEIK ISTPNHAPTA PSYP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017621991.11e-158PREDICTED: GATA transcription factor 26-like
TrEMBLA0A2P5YIN61e-149A0A2P5YIN6_GOSBA; Uncharacterized protein
STRINGGorai.002G208900.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1890268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.17e-17GATA transcription factor 26