PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25101_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 366aa    MW: 42053.4 Da    PI: 5.954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25101_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.22.1e-46271571128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknrat 78 
                                 lppG+rF+P+deelv++yL+ k++g +l+  + i+ev++y+++P++L +     + ++ ekewyfF++r++ky++g+r+ r++
  Cotton_A_25101_BGI-A2_v1.0  27 LPPGYRFKPRDEELVNYYLRLKISGLPLPP-NRIREVNLYRHDPETLTArnnyiSSNEVEKEWYFFTPRERKYTNGSRPARKA 108
                                 79*************************999.77**************84456543344667********************** PP

                         NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  +gyWkatg dk+v+  kg+++g+kktLvfy+g+ p+g kt+W mhey l
  Cotton_A_25101_BGI-A2_v1.0 109 GNGYWKATGADKAVIL-KGRKIGCKKTLVFYEGKPPRGFKTNWAMHEYVL 157
                                 ****************.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5325183IPR003441NAC domain
PROSITE profilePS5100552.86927184IPR003441NAC domain
PfamPF023653.4E-2528157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSNNGIFQDS MLKKQKEEEG EEYFRSLPPG YRFKPRDEEL VNYYLRLKIS GLPLPPNRIR  60
EVNLYRHDPE TLTARNNYIS SNEVEKEWYF FTPRERKYTN GSRPARKAGN GYWKATGADK  120
AVILKGRKIG CKKTLVFYEG KPPRGFKTNW AMHEYVLSDA PVRVRHGKED MKLDNWVLCR  180
LYKNRREAKQ KQIIPEEGND LACQEKVEPH KMAEPVSEPN NMVVPPVYDQ HEQLEVQPAN  240
MNIGQDTNWF PELDNLMPVS NDYGNYYMFD NNPTHGGGFQ QVPNYDDFVT NAAAAAPAPF  300
CSTFPLDNQF QSMGDAGFNL PPPQLQFQPH WPALPSPPLQ FSGVNTGFDL LVDEYLLDPE  360
LGMPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-50121873171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472540.0KC847254.1 Gossypium hirsutum NAC domain protein NAC77 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5Y9L60.0A0A2P5Y9L6_GOSBA; Uncharacterized protein
STRINGGorai.011G269500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17827310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-53NAC family protein