PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25087_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 23309.4 Da PI: 7.7155 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Cotton_A_25087_BGI-A2_v1.0 61 YSCSFCNREFRSAQALGGHMNVH 83 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.1E-6 | 58 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-4 | 59 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.552 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-6 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MKQGDEQCWM WMMKKRPSSS QLLRSHFEVS MECLTDTWEE QAFAEDAARC LRGCIWPPRS 60 YSCSFCNREF RSAQALGGHM NVHRRDRARL KQSLHGHHQY PNNEAAASKP KPQVDEAACT 120 LDHSIDYSTA TKRALNDVET SLSVGLSSVL FQNRPAVTCN KEAANNKRPK VAVSTLQCSP 180 LEWQVLELKP ASSMEDLDLE LRLGVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-13 | 56 | 83 | 2 | 29 | superman protein |
2l1o_A | 6e-13 | 56 | 83 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619025.1 | 1e-154 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A2P5Y9J6 | 1e-151 | A0A2P5Y9J6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G268100.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 1e-29 | C2H2 family protein |