PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25086_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 171aa    MW: 19674.1 Da    PI: 6.02
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25086_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-056183123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C++ F++   L  H+++H
  Cotton_A_25086_BGI-A2_v1.0 61 YSCSFCNREFKSAQALGGHMNVH 83
                                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-65887No hitNo description
Gene3DG3DSA:3.30.160.602.7E-45987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.7E-76185IPR007087Zinc finger, C2H2
SMARTSM003550.00246183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4896188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEQVDEQYCI WMMKRRPSSS QLLKSHFEVS TEYLNDSWEE QAFAEDAARC LRGCIWPPRS  60
YSCSFCNREF KSAQALGGHM NVHRKDRAKL KQLDHSIDDH KGQSFGSDYT PRKRVLNDDD  120
DGETSLSVGL SSVLFNNKRP KVAVSTWQVL ELKPVTSMEE DLDLELRLGV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135683229superman protein
2l1o_A5e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617952.11e-126PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A2P5Y9L11e-123A0A2P5Y9L1_GOSBA; Uncharacterized protein
STRINGGorai.011G268100.13e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10