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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_25003_BGI-A2_v1.0 | ||||||||
Common Name | F383_21542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36346.1 Da PI: 6.4146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.5 | 1.6e-15 | 53 | 102 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+++P+ ++K + a+ L +++eY+++Lq Cotton_A_25003_BGI-A2_v1.0 53 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLEVIEYVQYLQ 102 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.2E-18 | 49 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-23 | 49 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.999 | 51 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.95E-14 | 53 | 106 | No hit | No description |
Pfam | PF00010 | 6.8E-13 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MRTGKQSQEE EEYEDEEFGS KKQGSSSNQI MSGNAINNSN KGGKNSDKAN AIRSKHSVTE 60 QRRRSKINER FQVLRDIIPN TDQKRDTASF LLEVIEYVQY LQEKVKKYEG SYQEWNSEPA 120 KLMPWRNSHW RVQSFVGQQQ AVKNGSDPGS AFAGKFNENN ININPTVIAS AQNPVESDPV 180 RDTMSKAMDQ QPELGSRGMP LPIRGDNMLV HPLQRPVSEA QPTECFIGND TVNQQEDLTI 240 EGGTINISSV YSEGLLNSLT QALQSAGLDL SQANIAVQID LGKHANRGLT SGTSAKDPQS 300 APFQAMTHHR DVSNGEESDH AQKRMKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016748145.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
Refseq | XP_017603187.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
Swissprot | Q9CAA4 | 1e-114 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A0B0P0S9 | 0.0 | A0A0B0P0S9_GOSAR; Transcription factor BIM2-like protein | ||||
TrEMBL | A0A1U8PAG8 | 0.0 | A0A1U8PAG8_GOSHI; transcription factor BIM2-like | ||||
STRING | Gorai.009G327300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5987 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-104 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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