PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24681_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 230aa    MW: 25992.3 Da    PI: 10.3691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24681_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.7e-11107148351
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                  +GV+++    +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Cotton_A_24681_BGI-A2_v1.0 107 MRGVYFKN--LKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 148
                                 79***966..5********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-4106165IPR001471AP2/ERF domain
PfamPF008475.6E-5107149IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-8107151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-6113157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGKSSFL SPLSRFFCNG NPPESSSQNA KSISVHPMPS DSVNHIHGKS  60
IVKVDSGSPN VSGSSKEPHY QPFSGQTIKR RKRHRRKHVQ NQEPCLMRGV YFKNLKWQAA  120
IKVDKKQIHL GTVGSQEEAA RLYDRAAFMC GREPNFELPE EEKQELSRFK WDEFLAYTRR  180
SITNKKYKQR LGVEPQKRSE PVIENSDLDS KRGADSSSAS EEVGPDTSAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628637.11e-171PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_017628643.11e-171PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP91e-46ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1U8M4F21e-169A0A1U8M4F2_GOSHI; ethylene-responsive transcription factor-like protein At4g13040
STRINGGorai.001G105100.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.15e-49ERF family protein