PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24476_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 337aa    MW: 37772.4 Da    PI: 5.6364
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24476_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-28958150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                krien++nrqvtfskRrng++KKA+ELS+LCd+e+a+i+fs++g++  +s
  Cotton_A_24476_BGI-A2_v1.0  9 KRIENDTNRQVTFSKRRNGLIKKAYELSILCDIEIALIMFSPSGRVSHFS 58
                                79********************************************9997 PP
2K-box28.37.3e-11108182478
                       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                                 s+++ +++++ e+lq+e+++L+++i+  ++++R +  e  +  s+ e ++ e+ Le+ l++i ++Kn l++++++
  Cotton_A_24476_BGI-A2_v1.0 108 STTNTTTNSNVEELQREINNLRQQIQLAEEQLRVYEPEPSTLTSMAEFESCEKSLEQVLTRITQRKNYLMTSHLS 182
                                 45555899***************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002653.48E-37278No hitNo description
SuperFamilySSF554555.23E-30280IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-7114183IPR002487Transcription factor, K-box
PROSITE profilePS512976.724118203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRVKLQIKR IENDTNRQVT FSKRRNGLIK KAYELSILCD IEIALIMFSP SGRVSHFSGK  60
KRIEDVLSRY INLPDQDRGC LVRNKEILLS TLKKLQAEHD FVLQLASSTT NTTTNSNVEE  120
LQREINNLRQ QIQLAEEQLR VYEPEPSTLT SMAEFESCEK SLEQVLTRIT QRKNYLMTSH  180
LSSFTDPSSV QMYLDAQEGM PNSFGNDMVG WLPDNGQSQN PTQYCAGSES PCIPVRNQSS  240
MNTMYDPMGH GTNMSEMGGC HVTTTSSNDG LPSWHHNYSS TELLSAFMSS PTSFPLIKDI  300
GDPSISAKQE QVESGTNCSQ MPCRDEGASK LPHLNVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-18194190MEF2 CHIMERA
6bz1_B3e-18194190MEF2 CHIMERA
6bz1_C3e-18194190MEF2 CHIMERA
6bz1_D3e-18194190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963061e-36JX596306.1 Gossypium hirsutum clone NBRI_GE32858 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625061.10.0PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM468e-82AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A1U8MQY40.0A0A1U8MQY4_GOSHI; agamous-like MADS-box protein AGL104
STRINGGorai.007G242000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-81AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]