PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24436_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 85aa MW: 9591.75 Da PI: 8.9305 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 19 | 39 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg +F++++ +H r H Cotton_A_24436_BGI-A2_v1.0 19 CHKCGWPFPNPHPSAKHRRAH 39 ******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MDHGRHHSSG HESHGVHLCH KCGWPFPNPH PSAKHRRAHK KICGTIEGFK LVPSAEQITR 60 TNGSDDEPVP YDDHKNPNTK VPKFM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016699271.1 | 4e-52 | PREDICTED: uncharacterized protein LOC107914758 | ||||
Refseq | XP_016714214.1 | 8e-51 | PREDICTED: uncharacterized protein LOC107927611 | ||||
Refseq | XP_017649878.1 | 7e-51 | PREDICTED: uncharacterized protein LOC108489692 isoform X1 | ||||
Refseq | XP_017649879.1 | 7e-51 | PREDICTED: uncharacterized protein LOC108489692 isoform X2 | ||||
TrEMBL | A0A1U8K9T4 | 8e-51 | A0A1U8K9T4_GOSHI; uncharacterized protein LOC107914758 | ||||
TrEMBL | A0A2P5YWL3 | 1e-49 | A0A2P5YWL3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G150900.1 | 4e-50 | (Gossypium raimondii) |