PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_24414_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 276aa MW: 30868.3 Da PI: 5.1444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24414_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Cotton_A_24414_BGI-A2_v1.0 163 YRCETCNKVFNSYQALGGHRASH 185 9***********99999998887 PP
2	zf-C2H2	12.9	0.00033	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+Fs+ L H r+H Cotton_A_24414_BGI-A2_v1.0 212 HECPVCFKVFSSGQALGGHKRSH 234 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.014	163	185	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	4.2E-12	163	187	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.658	163	190	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.4E-8	163	234	No hit	No description
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-11	211	234	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	212	234	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	212	239	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	214	234	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MDKVKCKQLC LKSFANGETQ LRSNMLNLPI PPNVEQESAS PSYSSSSSEE KGQFYGLREN 60 PKRSIRFVDP EFVDADSVVV QSKESETESS KYPTQKRSKR TCAEPEPATS LSDTTTEEDV 120 AFCLMMLSRD QRKSKVAQHD DIDDEEEETD ESAEFNRTTR GKYRCETCNK VFNSYQALGG 180 HRASHKKIKA YETELAPENV GTTCSMTEKK THECPVCFKV FSSGQALGGH KRSHVAAATT 240 QTYVKSSNKL VVNFIDLNLP APVDDDDDDD GFLMLK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616271	1e-127	JX616271.1 Gossypium hirsutum clone NBRI_GE60799 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625494.1	0.0	PREDICTED: zinc finger protein ZAT4-like isoform X1
TrEMBL	A0A1U8MAV9	0.0	A0A1U8MAV9_GOSHI; zinc finger protein ZAT9-like isoform X1
STRING	Gorai.004G164000.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-46	C2H2-like zinc finger protein