PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24375_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 489aa    MW: 55200.7 Da    PI: 8.1972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24375_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.5e-21127217199
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                 f k l++s+v++  ++ lp  f+++h   +++++t+tledesg+++ vk+  +k++    l++GW++F++a++L egD++vF+
  Cotton_A_24375_BGI-A2_v1.0 127 FAKSLVRSHVGSCFWMGLPGMFCKTHL--PRKDTTITLEDESGNQFHVKYYADKTG----LSAGWRQFCSAHNLLEGDVLVFQ 203
                                 889*********************995..45778****************334444....*********************** PP

                                 E-SSSEE..EEEEE-S CS
                          B3  84 ldgrsefelvvkvfrk 99 
                                 l++ ++f  ++ ++r+
  Cotton_A_24375_BGI-A2_v1.0 204 LVEPTKF--KIYIIRA 217
                                 9876666..8887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-23119218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-25120218IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-28125216No hitNo description
PfamPF023622.1E-19127217IPR003340B3 DNA binding domain
SMARTSM010193.2E-19127218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.972127218IPR003340B3 DNA binding domain
PfamPF052663.0E-7364464IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDRRVKKEAE EIPQRTMSFA GRRLKSAGEE DFILALSTHT PTLNPSSSEK KEISKKANAL  60
TERKQKRKKC QSETIIKPAV SDCGEKKRGS MKNKDVGDGR CIAEIKSPAM ICAEEIQSNL  120
EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK THLPRKDTTI TLEDESGNQF HVKYYADKTG  180
LSAGWRQFCS AHNLLEGDVL VFQLVEPTKF KIYIIRANDL NELDGALGLL NLDAYTKQSD  240
AETGPTVSKS TKRKRPKSLP LASVRKKNKR SGLQRLSCNV GQPAEQSEND SEEVGSEVLE  300
GFKRTVSAIQ FKDITSFENI LVDGLVIDPE LSEDIRSKYY QLCCSQNAFL HENIIQGISF  360
KFKVGIISET VNIADAIRTC KLTTSRDEFD SWDRTLKAFE LLGMNVGFLR TRLHRLVNLA  420
FESEGAAETR RYFEAKAERD QTENEIRNLE AKLTELKDAS KTFGFEIESL QSKAETNEFR  480
FEKEVKAPW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825571e-71JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678076.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
RefseqXP_017620389.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A1U8IJ150.0A0A1U8IJ15_GOSHI; B3 domain-containing protein Os01g0234100-like isoform X2
STRINGGorai.007G212100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-34B3 family protein