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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_24360_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
bHLH |
| Protein Properties |
Length: 267aa MW: 29921.4 Da PI: 9.5942 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_24360_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 26 | 1.7e-08 | 172 | 212 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
Cotton_A_24360_BGI-A2_v1.0 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 212
699*****************87.....8****************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010500 | Biological Process | transmitting tissue development |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048462 | Biological Process | carpel formation |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MDVDMVKSST EDDHMDVMTM MMQMEEKLPD FCEPAFHTSP TLLPPETHFS NGTSSTTILP 60
TLPVYRNPNV SSINTFMTLP FGNGSNPVQE PMTPPLQPHN ICSSNSKFKY PTPFNNGNSY 120
PSSVDKKNSM AAMREMIFRI AAMQPIHIDP ESIKPPKRRN VKISKDPQSV AARHRRERIS 180
ERIRILQRLV PGGTKMDTAS MLDEAIHYVK FLKKQVQSLE QAAVNRPMGV GIPSAPVANM 240
GYSNSLVKAC QPSHYHHQAV GNMQMLR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Vercruyssen L, et al.
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
Plant Cell, 2014. 26(1): p. 210-29
[PMID:24443518] - Sparks EE,Benfey PN
HEC of a job regulating stem cells.
Dev. Cell, 2014. 28(4): p. 349-50
[PMID:24576420] - Zhu L, et al.
A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
Plant Cell, 2016. 28(4): p. 855-74
[PMID:27073231] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Boex-Fontvieille E, et al.
An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
Front Plant Sci, 2016. 7: p. 1246
[PMID:27625656] - Gaillochet C, et al.
Control of plant cell fate transitions by transcriptional and hormonal signals.
Elife, 2018.
[PMID:29058667]
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