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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_24225_BGI-A2_v1.0 |
| Common Name | F383_14810 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 358aa MW: 40547.5 Da PI: 8.5394 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_24225_BGI-A2_v1.0 | genome | BGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.9 | 6.7e-52 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
lppGfrFhPtdeel+ +yL kk++++++++ ++i++vdiyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra+ sgyW
Cotton_A_24225_BGI-A2_v1.0 8 LPPGFRFHPTDEELILHYLMKKLSSSPFPV-SIIADVDIYKFDPWDLPDKAVFGEKEWYFFSPRDRKYPNGARPNRAAGSGYW 89
79****************************.89***************7777899**************************** PP
NAM 84 katgkdkevlsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128
katg+dk ++++ + +g+kk Lvfykgr pkg kt+W+mheyrl
Cotton_A_24225_BGI-A2_v1.0 90 KATGTDKIIVASsmA--AgrggvysnIGVKKALVFYKGRPPKGIKTNWIMHEYRL 142
**********98550..244556677***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MRHPHSSLPP GFRFHPTDEE LILHYLMKKL SSSPFPVSII ADVDIYKFDP WDLPDKAVFG 60
EKEWYFFSPR DRKYPNGARP NRAAGSGYWK ATGTDKIIVA SSMAAGRGGV YSNIGVKKAL 120
VFYKGRPPKG IKTNWIMHEY RLSHNPNPNS NNRSFKSKDC SMRLDDWVLC RIYNKSHALS 180
STSTATNDQN QEEDEAEQFI QDALLPALES PSSNNNSNLK LQSQKSCSFS NLLDAMDYSM 240
LSSFLADNQC NTAGYESSSF GFRNFEQASV CDTSRFPQKL PQLTSSVVPA MENKLKRPYS 300
SIDQDYLEPP KKFISSCNHT KSTAQSDMTQ SNFLNQSFFS HSLLPMPSFS IPRIEERF
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 5e-72 | 7 | 175 | 16 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 5e-72 | 7 | 175 | 16 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
