PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_24123_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 790aa MW: 85740.2 Da PI: 6.0525

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24123_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.4e-21	107	162	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Cotton_A_24123_BGI-A2_v1.0 107 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 162 688999***********************************************999 PP
2	START	204.5	4.2e-64	302	527	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela++a++elvk+a+ +ep+W +s e +n de+ + f++ + + +ea+r +gvv+ ++ lve+l+d++ +W e Cotton_A_24123_BGI-A2_v1.0 302 ELALAAMYELVKMAQTDEPLWISSLeggrEVLNHDEYSRMFTPCIGikpagFLTEASRQTGVVIINSLALVETLMDSN-RWAE 383 5899*******************99999999999999999988899**************************. PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE- CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRa 145 +++ + +t++vissg ga+qlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + +v++ Cotton_A_24123_BGI-A2_v1.0 384 MFPcmiaRTSTTDVISSGmggtrnGAIQLMHAELQLLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTLRETSGaPTTYVKC 466 ********************************************************************9998899 PP EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++lpSg+++++++ng+skvtwvehv+++++++h l+r+l++sg+ +ga++wvatlqrqce+ Cotton_A_24123_BGI-A2_v1.0 467 RRLPSGCVVQDMPNGYSKVTWVEHVEYDESQVHHLYRPLLSSGIGFGAQRWVATLQRQCEC 527 *********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.36E-21	91	164	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-21	97	164	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	104	164	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	105	168	IPR001356	Homeobox domain
CDD	cd00086	1.24E-18	106	164	No hit	No description
Pfam	PF00046	1.3E-18	107	162	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	139	162	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.598	293	530	IPR002913	START domain
SuperFamily	SSF55961	2.2E-34	295	527	No hit	No description
CDD	cd08875	6.44E-126	297	526	No hit	No description
Pfam	PF01852	8.0E-56	302	527	IPR002913	START domain
SMART	SM00234	1.6E-49	302	527	IPR002913	START domain
SuperFamily	SSF55961	2.01E-23	556	783	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MSFGGFLDNS SGGGLGGATI VADIPFSNNM AAAGAMAQNI YNSPGLSLAL QQPSIDNQGD 60 GVRMGENFDA SIGRRSREEE HESRSGSDNI DGVSGDDHDA ADNRPRKKRY HRHTPQQIQE 120 LEALFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN SLLRQENDKL 180 RAENMSIREA MRNPICTNCG GPAIIGDLSL EEQHLRIENA RLKDELDRVC ALGSKFLGRP 240 LSSLATSIAP PLPNSNLELG VGSNGFGGLS TTLPLGPDFG GGVSNSLPVV PPNGVERSMF 300 LELALAAMYE LVKMAQTDEP LWISSLEGGR EVLNHDEYSR MFTPCIGIKP AGFLTEASRQ 360 TGVVIINSLA LVETLMDSNR WAEMFPCMIA RTSTTDVISS GMGGTRNGAI QLMHAELQLL 420 SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTLRETSGAP TTYVKCRRLP SGCVVQDMPN 480 GYSKVTWVEH VEYDESQVHH LYRPLLSSGI GFGAQRWVAT LQRQCECLAI LMSSTVPTGD 540 HTAITASGRR SMLKLAQRMT GNFCAGVCAS TVHKWNKLNA GNGEEDVRVM TRKSVDNPGE 600 PPGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEIAHIA KGQDHGNCVS 660 LLRSSAMNTN QSSMLILQET CMDAGGSLVV YAPVDIPAVQ VVMNGGDSAY VALLPSGFSI 720 IPDGTASPGP TTSNGNGDSH RVGGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTVQ 780 KIKAALQCES

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MSFGGFLDNS SGGGLGGATI VADIPFSNNM AAAGAMAQNI YNSPGLSLAL QQPSIDNQGD  60
GVRMGENFDA SIGRRSREEE HESRSGSDNI DGVSGDDHDA ADNRPRKKRY HRHTPQQIQE  120
LEALFKECPH PDEKQRLELS KRLCLETRQV KFWFQNRRTQ MKTQLERHEN SLLRQENDKL  180
RAENMSIREA MRNPICTNCG GPAIIGDLSL EEQHLRIENA RLKDELDRVC ALGSKFLGRP  240
LSSLATSIAP PLPNSNLELG VGSNGFGGLS TTLPLGPDFG GGVSNSLPVV PPNGVERSMF  300
LELALAAMYE LVKMAQTDEP LWISSLEGGR EVLNHDEYSR MFTPCIGIKP AGFLTEASRQ  360
TGVVIINSLA LVETLMDSNR WAEMFPCMIA RTSTTDVISS GMGGTRNGAI QLMHAELQLL  420
SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTLRETSGAP TTYVKCRRLP SGCVVQDMPN  480
GYSKVTWVEH VEYDESQVHH LYRPLLSSGI GFGAQRWVAT LQRQCECLAI LMSSTVPTGD  540
HTAITASGRR SMLKLAQRMT GNFCAGVCAS TVHKWNKLNA GNGEEDVRVM TRKSVDNPGE  600
PPGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEIAHIA KGQDHGNCVS  660
LLRSSAMNTN QSSMLILQET CMDAGGSLVV YAPVDIPAVQ VVMNGGDSAY VALLPSGFSI  720
IPDGTASPGP TTSNGNGDSH RVGGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTVQ  780
KIKAALQCES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608938.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0D2PSP0	0.0	A0A0D2PSP0_GOSRA; Uncharacterized protein
STRING	Gorai.001G171000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]