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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_23920_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 216aa MW: 25250.1 Da PI: 4.5573 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_23920_BGI-A2_v1.0 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 55.3 | 2.2e-17 | 3 | 97 | 2 | 99 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82
GfrF+Ptdee++ e L +kv+g++ +e++++i + +iy++eP++L+ + ++ +++e y++++r++ + + ++ +g
Cotton_A_23920_BGI-A2_v1.0 3 LTGFRFSPTDEEII-EILSQKVSGNTsMEAFDFIIQKNIYDFEPQELHgSerTIGLNKNERYYYCRRESDS------REVMGKGW 80
57************.88****999997899999**************8424455568889******98753......448899** PP
NAM 83 Wkatgkdkevlskkgel 99
Wkat + k+v s +ge+
Cotton_A_23920_BGI-A2_v1.0 81 WKATSHLKAVSSPNGEE 97
**********9986665 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MVLTGFRFSP TDEEIIEILS QKVSGNTSME AFDFIIQKNI YDFEPQELHG SERTIGLNKN 60 ERYYYCRRES DSREVMGKGW WKATSHLKAV SSPNGEEWRL CKIKYKGKEK VEEDMTPTEK 120 TFRHSTNKTL LTSFEAKDCS SGSSNSIAPM QLELAFEQPP LTQPILPVNN DINYYYDNYC 180 WSNSNMMLYE DHQLADQLDT LSEQPFSDLW SWDDYH
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX586241 | 2e-58 | JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence. |