 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_23721_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HB-other |
| Protein Properties |
Length: 297aa MW: 33794.9 Da PI: 7.0997 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_23721_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 47.8 | 2.4e-15 | 23 | 78 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+kR t+ q+ +Le++++ +r s e++++LA +lgLt++q++ WF+ rR k+k+
Cotton_A_23721_BGI-A2_v1.0 23 KKRAVKTPAQVIVLENFYKDERFASDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 78
89****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MNVGDELEEV QIEEDKVSLD VNKKRAVKTP AQVIVLENFY KDERFASDEM KAKLAVQLGL 60
TQKQISSWFC HRRLKDKRRD DYYANVQHDY SSGVIQDHVS GLRQDSCGSI KQGDYRYIDL 120
REVESRIIHG QGFPAADLTY ERRSHQYPYG VQMEDPSSES SLSLHDQLFL KSGNPYDMHI 180
SAKPTQNGAI VQTNSSSKSI GYKPSGYLKV RGQSENPVIS AVKRQMGRHY REDGPVLGIQ 240
FDPLPPGAFE FPSSHPVNGI CCADHGDVRS KCMREISLVF EREALGHSPF VYKFYYF
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ525361 | 1e-32 | HQ525361.1 Gossypium herbaceum clone NBRI_C_EYT27PB01CB7VA simple sequence repeat marker, mRNA sequence. |
