![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_23718_BGI-A2_v1.0 | ||||||||
Common Name | F383_10816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 539aa MW: 61443 Da PI: 9.7148 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.9 | 6.2e-17 | 11 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+ Cotton_A_23718_BGI-A2_v1.0 11 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 66 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.726 | 7 | 67 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 8 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-14 | 9 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.38E-15 | 9 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-14 | 11 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.57E-15 | 11 | 67 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 42 | 65 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 539 aa Download sequence Send to blast |
EEDKVSLDVN KKRAVKTPAQ VIVLENFYKE ERFPSDEMKA KLAVQLGLTQ KQISSWFCHR 60 RLKDKRRDDC YANGQHDYSS GVIQDHVSGL RQDSCGSIKQ GDYRYIDLRE VESRIIHGQG 120 FPAADLTYER RSHQYPYGVQ MEDPSSESSL SLHDQLFLKV GNRYDMHISA KPTQNGAIVQ 180 TNSSSKSIGY KPSGYLKVKG QSENPVITAV KRQMGRHYRE DGPVLGIQFD PLPPGAFEFP 240 SSHPVNEPIN IRDSRQPHCL DISGVMKQSK PKIINEVHNT MLSFQDSYME GANFNTVHGS 300 KSQDWRCHHQ PKYKPSFSCS NPFTYKDFPL DIYKGYADKP AISDCKRSWM SSKLVVERMV 360 PDSCSNHPGP YGRKITNEQK IPGLHDAHHI HMDPKAKNLP KTSSFIRACS ESLGNERGPF 420 ARMEKVENVV GEWKLRKDYP VRVKIDATNE LSVAKRVDLE FPQKDFVANA SHARLHLLTN 480 PNLPWMYRVA SVGMKLQKLV YPLGLRMHMV EKIAFVLLEK ERRSSSLLTR KAVVGRTWG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 59 | 67 | RRLKDKRRD |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644329.1 | 0.0 | PREDICTED: uncharacterized protein LOC108484940 isoform X1 | ||||
TrEMBL | A0A0B0NB29 | 0.0 | A0A0B0NB29_GOSAR; Homeobox 10 | ||||
STRING | Gorai.001G134800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24782 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 1e-68 | HB-other family protein |