PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_23600_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 641aa MW: 71166 Da PI: 6.1543

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_23600_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	408.2	7.7e-125	257	626	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 lv+lL +c+ea+ s++ +++++++++l elasp+g+ + Rl+ay+teALa r++r +++++++ +p+e + + +++ +al+l Cotton_A_23600_BGI-A2_v1.0 257 LVRLLAACVEAIGSKNIAAINHFISQLGELASPRGTVISRLTAYYTEALALRVTRVWPHIFHITTPRELD-RLDDDNGTALRL 338 6899************************************************************9998.568888999* PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 +++v+Pi+kf h+t N+ +l+a+eg++rvHi+Dfdi+qGlQWp+L+q+La+R+++p ++R+Tg+g+ sk+el+etg rLa Cotton_A_23600_BGI-A2_v1.0 339 LNQVTPIPKFVHFTSNEILLRAFEGKDRVHIVDFDIKQGLQWPSLFQSLAARTNPPSHVRVTGIGE----SKQELNETGGRLA 417 ****************************************************************....********* PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 fAe+l++pfef++ v++rled++l++L+ k++E++aVn+v+qlh++l + +++L l++s++P v+++eqe++ n Cotton_A_23600_BGI-A2_v1.0 418 GFAEALNLPFEFHP-VVDRLEDVRLWMLHAKENESIAVNCVFQLHKTLYDGNGGV--LRDFLGLIRSINPIAVIIAEQETENN 497 **********.7***************************96655444..489******************* PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 ++ +r++++l+yysa+fds++++lp es rik+E++ ++rei+n++aceg++r+erh+++ekWr+ +e+ GFk + ++++ Cotton_A_23600_BGI-A2_v1.0 498 ILNLEARVANSLRYYSAIFDSIDSTLPLESPVRIKIEEM-FAREIRNLIACEGSDRFERHTSFEKWRKLMEQGGFKCMGITDR 579 ***********************************.*************************************** PP GRAS 333 aakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374 + q ++ll+++ s+ y+v+++ +g+l+l W d+pL++vSaW+ Cotton_A_23600_BGI-A2_v1.0 580 ELVQSQMLLKMYTSENYSVKKQgpdgdDGALTLSWLDEPLYTVSAWT 626 *********99977777779****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.026	231	601	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-122	257	626	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE TSAVQFQACH FQTSMSTQRL DLPCNFSRKE TSKSQTIRPA 60 VESKAKTSSC SIKQNIRLPP LTTTSAQNPF EGRIEIKGKS LKRFAEQGLV DDETVINRAK 120 RKKGSSDDEK PDDHGGLSLG QLGAGNFWFQ PSLSGDEERG TPPLPLSNNP WIDSVITELT 180 DVGEKDVETT HRPGKEASGS GSTSTSSESH SLGPPLNVQA KEYERGNGSG NPYPHEGARL 240 GANEEEINHR EHEGFELVRL LAACVEAIGS KNIAAINHFI SQLGELASPR GTVISRLTAY 300 YTEALALRVT RVWPHIFHIT TPRELDRLDD DNGTALRLLN QVTPIPKFVH FTSNEILLRA 360 FEGKDRVHIV DFDIKQGLQW PSLFQSLAAR TNPPSHVRVT GIGESKQELN ETGGRLAGFA 420 EALNLPFEFH PVVDRLEDVR LWMLHAKENE SIAVNCVFQL HKTLYDGNGG VLRDFLGLIR 480 SINPIAVIIA EQETENNILN LEARVANSLR YYSAIFDSID STLPLESPVR IKIEEMFARE 540 IRNLIACEGS DRFERHTSFE KWRKLMEQGG FKCMGITDRE LVQSQMLLKM YTSENYSVKK 600 QGPDGDDGAL TLSWLDEPLY TVSAWTPIDV AGSSSSFSQP S

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE TSAVQFQACH FQTSMSTQRL DLPCNFSRKE TSKSQTIRPA  60
VESKAKTSSC SIKQNIRLPP LTTTSAQNPF EGRIEIKGKS LKRFAEQGLV DDETVINRAK  120
RKKGSSDDEK PDDHGGLSLG QLGAGNFWFQ PSLSGDEERG TPPLPLSNNP WIDSVITELT  180
DVGEKDVETT HRPGKEASGS GSTSTSSESH SLGPPLNVQA KEYERGNGSG NPYPHEGARL  240
GANEEEINHR EHEGFELVRL LAACVEAIGS KNIAAINHFI SQLGELASPR GTVISRLTAY  300
YTEALALRVT RVWPHIFHIT TPRELDRLDD DNGTALRLLN QVTPIPKFVH FTSNEILLRA  360
FEGKDRVHIV DFDIKQGLQW PSLFQSLAAR TNPPSHVRVT GIGESKQELN ETGGRLAGFA  420
EALNLPFEFH PVVDRLEDVR LWMLHAKENE SIAVNCVFQL HKTLYDGNGG VLRDFLGLIR  480
SINPIAVIIA EQETENNILN LEARVANSLR YYSAIFDSID STLPLESPVR IKIEEMFARE  540
IRNLIACEGS DRFERHTSFE KWRKLMEQGG FKCMGITDRE LVQSQMLLKM YTSENYSVKK  600
QGPDGDDGAL TLSWLDEPLY TVSAWTPIDV AGSSSSFSQP S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-73	241	627	1	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622689.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A1U8N258	0.0	A0A1U8N258_GOSHI; scarecrow-like protein 28
STRING	Gorai.003G162400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein