PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23426_BGI-A2_v1.0
Common NameF383_24368
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 413aa    MW: 45200.8 Da    PI: 6.8791
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23426_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-16174223155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++grW+++I++      + k+++lg f+ta  Aa+a+++a+ k++g
  Cotton_A_23426_BGI-A2_v1.0 174 SQYRGVTFYRRTGRWESHIWE------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223
                                 78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9174223IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-16174232IPR016177DNA-binding domain
CDDcd000182.01E-11175233No hitNo description
Gene3DG3DSA:3.30.730.105.3E-17175231IPR001471AP2/ERF domain
PROSITE profilePS5103217.728175231IPR001471AP2/ERF domain
SMARTSM003805.1E-33175237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLDLNLDIVS SESSCDENIN NSSSNNNNNV LVNGGAVTLT QMEDSGSTKS SIINDEDFPS  60
NAAVRDENSS ADASATFVFD ILKKETGDKT TNNFNTIVKK VENPSQDFVT RQLFPVSGEK  120
VGGPELEFGS TKPLARPQWL NLSYAESTGE AELTTFQIKP QPRKSRRGPR SRSSQYRGVT  180
FYRRTGRWES HIWECGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF TLSDYEEDMK  240
QMKNMSKEEF VHALRRNGHY NLDLSLGISA TRNGSNDTGD FIFRNTTGTG ESSGSVSVGV  300
QPDHCQTIAS RHPPMLSNVY PAVLLPYNEG RAIQKRPEAV SSNWAWQMQG TGKIITPTPV  360
FPIAASSGFS SSVAIASSSS SLSPAFNNSG RNPCFPAPAT STNNTSHYYN YRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5903373e-84JX590337.1 Gossypium hirsutum clone NBRI_GE25232 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647314.11e-154PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_017647315.11e-154PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A0B0MUQ61e-151A0A0B0MUQ6_GOSAR; Ethylene-responsive transcription factor RAP2-7-like protein
STRINGGorai.011G241700.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-42related to AP2.7