PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23121_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 178aa    MW: 19974.2 Da    PI: 6.9455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23121_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-054264123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C + F++   L  H+++H
  Cotton_A_23121_BGI-A2_v1.0 42 YTCTFCRREFRSAQALGGHMNVH 64
                                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-63969No hitNo description
Gene3DG3DSA:3.30.160.606.0E-44067IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-54265IPR007087Zinc finger, C2H2
SMARTSM003550.00664264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1574269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MWNPIKAQEV PHEPDDYESW EVKAFAEDTS NAMGTTWPPR SYTCTFCRRE FRSAQALGGH  60
MNVHRRDRAR LHQTQPLPHG GDATTVPLIN HTLLYQFPSP NGLFFTSSPT NNACSIDSPY  120
HPSVPPKNFP ATPPGLNSSS SLCSSSQDLK ETSMEDLDLE LRLGHRPKTT IKEQNQRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-133764229superman protein
2l1o_A2e-133764229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641070.11e-132PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A1U8P2C91e-130A0A1U8P2C9_GOSHI; transcriptional regulator SUPERMAN-like
TrEMBLA0A2P5X9Z71e-131A0A2P5X9Z7_GOSBA; Uncharacterized protein
STRINGGorai.003G181300.11e-128(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-41C2H2 family protein