PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22728_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 243aa    MW: 26178.5 Da    PI: 8.4957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22728_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000381103123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+k F+++  L  H  +H
  Cotton_A_22728_BGI-A2_v1.0  81 YKCTVCNKGFPSHQALGGHKASH 103
                                 9**************99998887 PP
2zf-C2H210.80.0016153172120
                                 EEETTTTEEESSHHHHHHHH CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                 ++C++C+k+Fs+   L  H 
  Cotton_A_22728_BGI-A2_v1.0 153 HVCSICNKTFSSGQALGGHK 172
                                 79*********988876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-1080103No hitNo description
PfamPF139121.4E-1181105IPR007087Zinc finger, C2H2
SMARTSM003550.007281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.70281103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-10148175No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4149176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.4E-13153177IPR007087Zinc finger, C2H2
SMARTSM003550.045153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785153175IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALDTLNSPT SAPPLLDRDD IVDLHCVEPW TKRKRTKRPR SENPPTEEEY LALCLLMLAQ  60
GTTTRTIPSA SAASRTSLNL YKCTVCNKGF PSHQALGGHK ASHRKLVVGA GDHLTITTAA  120
TKTTADVSAV AATTVTPPKN LPLMINRVGN KNHVCSICNK TFSSGQALGG HKRCHYEAGS  180
NNNSGSDGAK LPSQSQRDFD LNLPAGPQEL STPDVNQRDK YSTDDEVVEN PWPPAKRVGC  240
HVC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630022.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1U8HWP61e-179A0A1U8HWP6_GOSHI; zinc finger protein ZAT10-like
STRINGGorai.007G222500.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-38salt tolerance zinc finger