PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22615_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 509aa MW: 55650.4 Da PI: 7.343 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 1.9e-30 | 277 | 335 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Cotton_A_22615_BGI-A2_v1.0 277 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHH 335 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-33 | 262 | 337 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 269 | 337 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.126 | 271 | 337 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 276 | 336 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-26 | 278 | 335 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MEKHHPLPFF HSDDLLRRRS SASDRTHDDS SDDHVKVKPH IMEMDFFSTD HHQDSKINTN 60 GSSSSFDVNT GLNLLSSRTP SEKKSNTEMS VLKIELERLH EENRRLKSML DHITRNYNEL 120 QGQLFMAVQK QALLAINKQQ VNKEGGVKGM SSHPIMSIQQ SMDPRRPSTT LDVNEPSATD 180 DKRTELSASS PANTTTSTMD VVSKDGNDDH YRTVHIQGKH VFVEDGIDQT CQQSWGTSPK 240 SSPMVDEPKK EEEQVPEVAF KKARVSVRAR SEAPMITDGC QWRKYGQKMA KGNPCPRAYY 300 RCTMAVGCPV RKQVQRCAED KSILITTYEG NHNHHLPPAA TAMAKTTSAA AAMVLSGSTT 360 SKDGLPNSSY LHSSLPYAST MATLSASPPF PTITLDLTQG PNPVPFIRPP PSPPTFPLPL 420 HGYPELSALP AMQIGQQQQQ HTASMVETVT AAIASDPNFT AVLAAAISTF MGAPPPPLPP 480 SNNGNNSTTS QALPGSPQLP QSCTTFSTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 267 | 337 | 8 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 2e-20 | 263 | 339 | 1 | 76 | WRKY transcription factor 1 |
2lex_A | 2e-20 | 267 | 337 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669828 | 0.0 | KF669828.1 Gossypium hirsutum WRKY transcription factor 79 (WRKY79) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636541.1 | 0.0 | PREDICTED: probable WRKY transcription factor 47 | ||||
TrEMBL | A0A1U8L677 | 0.0 | A0A1U8L677_GOSHI; probable WRKY transcription factor 47 | ||||
STRING | Gorai.008G134300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7156 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-72 | WRKY family protein |