PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22600_BGI-A2_v1.0

Common Name

F383_12590

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 283aa MW: 30808.2 Da PI: 4.6449

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22600_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.4e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C +++ lC +C ++ H H++vpl Cotton_A_22600_BGI-A2_v1.0 4 QCNVCEVAEAKVLCCSDEAALCLECDEKVHAAnklaskHQRVPL 47 6***999*******************66899999999986 PP
2	zf-B_box	23.5	1.2e-07	54	94	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++e +fC +++ llC++C + H H Cotton_A_22600_BGI-A2_v1.0 54 MPICDICQETSGFFFCLQDRALLCRKCDISVHTAnpyvssH 94 799****99*****************99544555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.48	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.97E-7	3	47	No hit	No description
SMART	SM00336	2.5E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.101	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	4.7E-13	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.8E-6	54	94	IPR000315	B-box-type zinc finger
CDD	cd00021	3.42E-8	55	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MRIQCNVCEV AEAKVLCCSD EAALCLECDE KVHAANKLAS KHQRVPLSSS SSHMPICDIC 60 QETSGFFFCL QDRALLCRKC DISVHTANPY VSSHQRFVLT GVKVGLETTN DPVGSSSYIK 120 SPSSEKTSET KSDSMSKRDA PMSFISECNE VLPSNIGVEN SVPTKVSYGG GSTAGSIQSW 180 HMDDLFGLTG LNQSFGYMDN ELTKADSGKR GDSDSSPFLQ PAEEEVFDDE YMGQVPDSHW 240 AVPKVPSPPT ASGLYWPKDS HNQSDSAVFV PDISWSSVEN PFH

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017639562.1	0.0	PREDICTED: B-box zinc finger protein 22-like
Swissprot	Q9SYM2	9e-87	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A0B0PTA4	0.0	A0A0B0PTA4_GOSAR; Uncharacterized protein
STRING	Gorai.007G331700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5606	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	4e-85	light-regulated zinc finger protein 1