PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22535_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 406aa    MW: 44375.9 Da    PI: 10.7954
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22535_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322.1e-4125101278
                                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 C v+gC+adls++++yhrrhkvCevhsk+p+v ++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  Cotton_A_22535_BGI-A2_v1.0  25 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPKVSIRGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 101
                                 **************************************************************************986 PP
2SBP36.41.4e-111731985378
                                 TT--SS--S-STTTT-------S--- CS
                         SBP  53 sefDeekrsCrrrLakhnerrrkkqa 78 
                                  efDe+krsCr+rL++hn+rrrk+q+
  Cotton_A_22535_BGI-A2_v1.0 173 VEFDEGKRSCRKRLDGHNRRRRKPQP 198
                                 59*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-341986IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.2742299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-3823104IPR004333Transcription factor, SBP-box
PfamPF031102.0E-302598IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.08E-9173201IPR004333Transcription factor, SBP-box
PfamPF031107.6E-5174195IPR004333Transcription factor, SBP-box
PROSITE profilePS511418.989174196IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MESAPSSASF KRARPPGFGN QVPSCLVDGC TADLSKCRDY HRRHKVCEVH SKTPKVSIRG  60
QEQRFCQQCS RFHSLVEFDE GKRSCRKRLD GHNRRRRKPQ PNALTHHHLL RLKGLGRLVS  120
ETKYLHAWLM VALRTSANAG TTIDAIKYAK STLKPQKSQL GVKNNDFVSS AAVEFDEGKR  180
SCRKRLDGHN RRRRKPQPNA LTVNSGSLLS NPPGSRYLLF SGPQIFSTTS MTDSSTGAVK  240
VKTDISSALN FSSRNSSFVG ASSLNYKGER QFSFLQSANS SHPGVSVCQP LVNANPSPGN  300
GGITQKMLLN GLNRTVESNR ALSLLSSQPA ETREISLSPM VQSGSTSSLI PNLQYKGLGM  360
EGEQVGTILA TDQNTNTDLH GNGVFRTGHP GSSASGTHHT LTFSWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-2925981184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178195KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223290.0KJ622329.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665792.11e-162PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016665793.11e-162PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016665795.11e-162PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016665796.11e-162PREDICTED: squamosa promoter-binding-like protein 16
SwissprotB9DI202e-43SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI112e-43SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A1U8HIB31e-161A0A1U8HIB3_GOSHI; squamosa promoter-binding-like protein 16
STRINGGorai.005G164600.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-45SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]