PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22326_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 527aa    MW: 59348.6 Da    PI: 4.4703
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22326_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS135.84.5e-421595233374
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 +lL +  ea ++++ ela+ +L  + e asp g++ +R+a+ +    ++ ++++++ l     ++e+    s++  aa+++f+
  Cotton_A_22326_BGI-A2_v1.0 159 HLLKAYGEATEKNQSELAEVILRCVGEKASPVGETWERIAFNL----SQDIQHQSDYL-----MQES----SKNFEAAFRVFY 228
                                 7888889999******************************975....55566522222.....2233....56788999**** PP

                        GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetger 164
                                 +v+P+ +f+h++aN+aIlea+  + +++Hi+Df+is+GlQWp+ ++a+a +     s+R+T +  +e++   s  + + t ++
  Cotton_A_22326_BGI-A2_v1.0 229 QVFPYWRFAHFAANSAILEAMPDDaDTLHIVDFNISEGLQWPPVIEAMAWKH---KSMRLTSIRWEEEDsahSPWRFKGTMRQ 308
                                 *********************88879***********************985...56******99888877788899****** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...... 237
                                 L + A+++g++++ + +    ++dl ++eL++++    gE la n+++ + +    + ++ +   e+L++ k++ +       
  Cotton_A_22326_BGI-A2_v1.0 309 LCNHAKSFGLKLKVEEM---GIHDL-VNELKMNKrggaGEWLAFNCMVGMGKGK--RREIVN---EFLNVAKEVLASsgnyva 382
                                 *************9997...78888.899999888999**********999987..333334...788888877553222222 PP

                        GRAS 238 ....vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetl 312
                                     v+++ + + ++   + + F + f   l +y a+++s+e++++++  ++r+ +E  ++g++i+     ++ + +++    
  Cotton_A_22326_BGI-A2_v1.0 383 rdrgVITFGDGDaCEKlkDCSGFGTFFNGQLMHYQAVLESMESNFAKHLvQARMAMECLFVGPNICGQAWLQKWKEINEIC-- 463
                                 2444777887774343445569**********************998888***************8765555555222222.. PP

                        GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                                     +      ++ +++s++  ++ak ++r+ +   ++v     + ++l l W++++Lv vS+Wr
  Cotton_A_22326_BGI-A2_v1.0 464 -DFDA---GTALEGLRVSSERLMEAKEIVRERDTS-FEVSiggVSGNELALEWRGNTLVRVSSWR 523
                                 .2222...234567889***************944.88887678899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.047131527IPR005202Transcription factor GRAS
PfamPF035141.6E-39159523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MMQSDNFPPS SWPFESFLNS SIDQFEVQPY GHNMGKNFDG CEFSSSFNTR EDSPEISHFS  60
TMFSGEIFPC NDHLQEFLVP LEGLDSMLTD GIEDLYDCLD EGEDSFGSMM PLSSQSQDVC  120
SPSASVRSSE ASTDMTSTQS SLTLPGDSME IDNQLSLFHL LKAYGEATEK NQSELAEVIL  180
RCVGEKASPV GETWERIAFN LSQDIQHQSD YLMQESSKNF EAAFRVFYQV FPYWRFAHFA  240
ANSAILEAMP DDADTLHIVD FNISEGLQWP PVIEAMAWKH KSMRLTSIRW EEEDSAHSPW  300
RFKGTMRQLC NHAKSFGLKL KVEEMGIHDL VNELKMNKRG GAGEWLAFNC MVGMGKGKRR  360
EIVNEFLNVA KEVLASSGNY VARDRGVITF GDGDACEKLK DCSGFGTFFN GQLMHYQAVL  420
ESMESNFAKH LVQARMAMEC LFVGPNICGQ AWLQKWKEIN EICDFDAGTA LEGLRVSSER  480
LMEAKEIVRE RDTSFEVSIG GVSGNELALE WRGNTLVRVS SWRNTQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1316552227378Protein SCARECROW
5b3h_A2e-1316552226377Protein SCARECROW
5b3h_D2e-1316552226377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604886.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5XR970.0A0A2P5XR97_GOSBA; Uncharacterized protein
STRINGGorai.006G184400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-19GRAS family protein